Command line usageΒΆ

Once the installation is successful, options for the corresponding usecase could be obtained by typing the corresponding command, or by adding -h flag to it:

  • visualqc_alignment
  • visualqc_freesurfer
  • visualqc_func_mri
  • visualqc_anatomical
  • visualqc_defacing
  • visualqc_diffusion

Each of them has a shorter name shortcut too to save a bit of typing :):

  • vqcalign
  • vqcfs
  • vqcfunc
  • vqcanat
  • vqcdeface
  • vqcdwi

For example,

vqcalign
vqcfunc -h

Those options for each command are shown in their respective pages:

Check the bottom of this page for examples.

Examples showing the usage of each of these use cases are shown below: