Welcome to visualqc’s documentation!

Contents:

• VisualQC
  • Use-cases supported
  • Features
  • Manual
  • Galleries
  • Contributions
  • Citations
• Installation
  • Stable release
  • Requirements
  • From sources
• Use-cases supported
  • Structural MRI use-cases
  • Functional MRI use-cases
  • Diffusion MRI use-cases
  • Registration/Alignment use-cases
• Recommended Usage
  • General suggestions:
  • For Freesurfer outputs:
  • Alignment checks (Registration quality)
• Command line usage
• Data formats and requirements
• Review interface
  • Common elements
  • Review interface - Freesurfer
  • Review interface - Anatomical / T1w MRI
  • Review interface - Registration
  • Review interface - Functional MRI
  • Review interface - Diffusion MRI
  • Review interface - Defacing
• Gallery - Freesurfer Parcellation
• Gallery - Freesurfer (labels filled)
• Gallery - Functional MRI scan - artefact detection and rating
• Gallery - Diffusion MRI artefact detection and rating
• Gallery - Registration : comparison of spatial alignment
• Gallery - Defacing algorithm accuracy
• Gallery - Segmentation/ROI - anatomical accuracy evaluation
• Gallery - Structural T1w MRI - artefact detection and rating
• Command line usage - Freesurfer
  • Input and output
  • Overlay options
  • Outlier detection
  • Layout options
  • Workflow
• Command line usage - Defacing
  • Input and output
• Command line usage - Functional MRI
  • Input and output
  • Preprocessing
  • Outlier detection
  • Layout options
  • Workflow
• Command line usage - Diffusion MRI
  • Input and output
  • Preprocessing
  • Visualization
  • Outlier detection
  • Layout options
  • Workflow
• Command line usage - Alignment
  • Input and output
  • Visualization
  • Outlier detection
  • Layout options
  • Workflow
• Command line usage - T1w MRI
  • Input and output
  • Visualization
  • Outlier detection
  • Layout options
  • Workflow
• Generating Screenshots
• Example usage - Freesurfer
  • Generating and Downloading Required Files from a remote SSH server
• Example usage - Segmentation
• Example usage - Defacing
• Example usage - Functional MRI
• Example usage - Diffusion MRI
• Example usage - Alignment
• Example usage - T1w MRI
• Contributing
  • Types of Contributions
  • Get Started!
  • Pull Request Guidelines
  • Tips
• Citation
• Credits
  • Development Lead
  • Contributors

Indices and tables

• Index
• Module Index
• Search Page